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Table 5 The number of OTUs for which the abundance was significantly different between specific soil treatments and the untreated control for each soil treatment as determined by DESeq2 analysis

From: Effect of fungal, oomycete and nematode interactions on apple root development in replant soil

Treatment Fungi Bacteria Oomycetes Nematodes
Nem_Fung 434, 13, 141 2291, 103, 116 55, 2, 5 22, 3, 0
Nem_Oom 464, 25, 6 1961, 25, 53 65, 5, 5 22, 4, 0
Nem_ Oom_ Fung 435, 17, 14 2723, 187, 282 55, 10, 6 22, 2, 0
Nem 551, 17, 8 5733, 11, 0 76, 3, 5 22, 2, 0
Total OTUs 2046 5837 174 38
  1. 1The first number is the number of OTUs after DeSeq2 filtering (hence compared between treatments); the second number is the number of OTUs whose relative abundance is significantly (p < 0.05) less in the treated than in the untreated soil; the third number is the number of OTUs whose relative abundance is significantly (p < 0.05) greater in the treated than in the untreated soil
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CABI Agriculture and Bioscience

ISSN: 2662-4044